Abstract
We report molecular dynamics simulations of a generic hydrophobic nanopore connecting two reservoirs which are initially at different concentrations, as in a biological cell. The nanopore is impermeable to water under equilibrium conditions, but the strong electric field caused by the ionic concentration gradient drives water molecules in. The density and structure of water in the pore are highly field dependent. In a typical simulation run, we observe a succession of cation passages through the pore, characterized by approximately bulk mobility. These ion passages reduce the electric field, until the pore empties of water and closes to further ion transport, thus providing a possible mechanism for biological ion channel gating.
REFERENCES
- 1. G. Hummer, J. C. Rasaiah, and J. P. Nowortya, Nature (London) 414, 188 (2001). Google ScholarCrossref, CAS
- 2. O. Beckstein, P. C. Biggin, and M. S. P. Sansom, J. Phys. Chem. B 105, 12902 (2001). , Google ScholarCrossref, CAS
- 3. R. Allen, S. Melchionna, and J.-P. Hansen, Phys. Rev. Lett. 89, 175502 (2002); , Google Scholar
R. Allen, S. Melchionna, and J.-P. Hansen, J. Chem. Phys. 119, 3905 (2003). Google ScholarScitation, CAS - 4. O. Becksteinand M. S. P. Sansom, Proc. Natl. Acad. Sci. U.S.A. 100, 7063 (2003). , Google ScholarCrossref, CAS
- 5. B. Hille, Ionic Channels of Excitable Membranes (Sinauer, Sunderland, MA, 1992). , Google Scholar
- 6. M. F. Toney, Nature (London) 368, 444 (1994). Google ScholarCrossref, CAS
- 7. Y. Jiang, A. Lee, J. Chen, M. Cadene, B. T. Chait, and R. MacKinnon, Nature (London) 417, 523 (2002). , Google ScholarCrossref, CAS
- 8. Y. Jiang, A. Lee, J. Chen, V. Ruta, M. Cadene, B. T. Chait, and R. MacKinnon, Nature (London) 423, 33 (2003). , Google ScholarCrossref, CAS
- 9. S. Kuyucak, O. S. Andersen, and S.-H. Chung, Rep. Prog. Phys. 64, 1427 (2001). , Google ScholarCrossref, CAS
- 10. P. S. Crozier, R. L. Rowley, N. B. Holladay, D. Henderson, and D. D. Busath, Phys. Rev. Lett. 86, 2467 (2001). , Google ScholarCrossref, CAS
- 11. S.-H. Chung, T. W. Allen, and S. Kuyucak, Biophys. J. 83, 263 (2002). , Google ScholarCrossref, CAS
- 12. S. Bernècheand B. Roux, Nature (London) 414, 73 (2001). , Google ScholarCrossref, CAS
- 13. D. P. Tieleman, P. C. Biggin, G. R. Smith, and M. S. P. Sansom, Quart. Rev. Biophys.34, 473 (2001). , Google ScholarCrossref, CAS
- 14. B. Rouxand M. Karplus, Annu. Rev. Biophys. Biomol. Struct. 23, 731 (1994). , Google ScholarCrossref, CAS
- 15. C. F. Lopez, M. Montal, J. K. Blasie, M. L. Klein, and P. B. Moore, Biophys. J. 83, 1259 (2002). , Google ScholarCrossref, CAS
- 16. W. Nonnerand B. Eisenberg, Biophys. J. 75, 1287 (1998). , Google ScholarCrossref, CAS
- 17. Y. Zhou, J. H. Morais-Cabral, A. Kaufman, and R. MacKinnon, Nature (London) 414, 43 (2001). , Google ScholarCrossref, CAS
- 18. H. J. C. Berendsen, J. R. Grigera, and T. P. Straatsma, J. Phys. Chem. 91, 6269 (1987). , Google ScholarCrossref, CAS
- 19. E. Spohr, Electrochim. Acta 44, 1697 (1999). , Google ScholarCrossref, CAS
- 20. C. Y. Lee, J. A. McCammon, and P. J. Rossky, J. Chem. Phys. 80, 4448 (1984). , Google ScholarScitation, CAS
- 21. R. Allen, S. Melchionna, and J.-P. Hansen, J. Phys.: Condens. Matter 15, S297 (2003). , Google ScholarCrossref, CAS
- 22. W. Smith and T. R. Forester (1999), the DLPOLY_2 User Manual. , Google Scholar
- 23. D. Frenkel and B. Smit, Understanding Molecular Simulation: From Algorithms to Applications, 2nd ed. (Academic, New York, 2001). Google Scholar
- 24. M. P. Allen and D. J. Tildesley, Computer Simulation of Liquids (Clarendon, Oxford, 1987). Google Scholar
- 25. H. J. C. Berendsen, J. P. M. Postma, W. F. van Gunsteren, A. DiNola, and J. R. Haak, J. Chem. Phys. 81, 3684 (1984). Google ScholarScitation, CAS
- 26. U. Essmann, L. Perera, M. L. Berkowitz, T. Darden, H. Lee, and L. G. Pedersen, J. Chem. Phys. 103, 8577 (1995). , Google ScholarScitation, CAS
- 27. R. M. Lynden-Belland J. C. Rasaiah, J. Chem. Phys. 107, 1981 (1997). , Google ScholarScitation, CAS
- © 2004 American Institute of Physics.
Please Note: The number of views represents the full text views from December 2016 to date. Article views prior to December 2016 are not included.

